Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015820371.1_cds_XP_016500358.1_14195
CDS Infomation

[gene=LOC107818821] [db_xref=GeneID:107818821] [protein=coatomer subunit beta'-2-like] [protein_id=XP_016500358.1] [location=join(28120..28122,28346..28366,28456..28517,28781..28835,30325..30361,30475..30800,30923..31054,31141..31289,31951..32019,32302..32452,32546..32611,33227..33415,33784..33924,34011..34085,34192..34368,34467..34558,34649..34765,35209..35323,35433..35504,35855..36051,36136..36229,36773..36879,37112..37238,37457..37601,38233..38252)] [gbkey=CDS]
Sequence

ATGCCTCTGAGGTTGGAGATTAAGAGGAAACTTGCTCAAAGATCAGAAAGGGTAAAGTGC
GTGGATCTACATCCTACAGAGCCATGGATATTGGCAAGTTTGTATTCAGGGACTGTTTGC
ATCTGGAACTACCAGACCCAGACAATGGTTAAATCTTTCGAAGTTACTGAATTACCAGTT
AGGTCAGCAAAGTTTATAGCACGCAAGCAGTGGGTTGTTGCTGGTGCTGACGATATGTTT
ATTCGTGTATACAATTACAATACCATGGACAAGGTCAAAGTCTTTGAGGCGCACACTGAT
TATATTAGGTCTGTGGCTGTTCACCCTACTCTACCATATGTGCTGTCATCTTCTGATGAC
ATGCTTATAAAGCTCTGGGACTGGGATAAGGGATGGGTATGCACTCAAATTTTTGAGGGT
CATTCCCATTATGTGATGCAAGTCACATTTAATCCGAAAGACACCAATACATTTGCCAGT
GCATCTCTTGATCGGACTATAAAGATTTGGAACCTCGGCTCCCCTGACCCAAACTTCACG
TTGGATGCGCATCTGAAAGGGGTTAATTGTGTAGACTATTTCACTGGTGGTGATAAACCT
TATCTGATAACGGGTTCTGATGACCACACTGCTAAGGTGTGGGACTATCAGACAAAAAGT
TGTGTCCAGACTCTTGAAGGCCATACACACAATGTGTCCGCCGTATGTTTTCATCCTGAG
CTTCCTATTATAATTACGGGATCTGAAGATGGTACAGTTCGTATATGGCATGCAACCACT
TATAGACTTGAGAACACTTTGAATTACGGTCTTGAAAGAGTTTGGGCAATTGGTTACATG
AGAAGTTCAAGAAGGGTTGTAATCGGTTATGATGAGGGAACTATCATGGTAAAAATTGGT
CGAGAAGAACCAGTTGCCAGCATGGATAACAGTGGAAAAATTATATGGGCTAAGCACAAT
GAAGTTCAAACAGTCAACATCAAGAGTGTGGGGGCGGATTATGAGGTTACTGATGGAGAA
AGGTTGCCTTTGGCTGTCAAGGAATTGGGAACTTGTGACCTCTATCCACAAAGCTTGAAG
CATAACCCAAATGGAAGGTTCGTTGTTGTTTGTGGAGATGGAGAGTATATCATATATACT
GCTCTAGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAT
GGAGAATATGCTGTTAGGGAAAGTACGTCAAGGATTAAGATCTTCAGCAAAAATTTCCAG
GAAAAGAAGAGCATCCGTCCTACTTTCTCAGCTGAGCGCATCTATGGAGGTACTCTATTG
GCGATGTGCTCAAATGATTTTATTTGCTTTTATGATTGGGCTGACTGCAGGCTGATACGG
CGAATTGATGTTAATGTGAAGAACCTGTACTGGGCTGACAGTGGTGATATGGTGGCAATT
GCAAGTGATACATCCTTCTACATACTTAAGTACAATCGTGATGTGGTTTCTGCCCATTTA
GATAGTGGAAGATCAGTAGATGAGCAAGGCGTTGAAGAAGCTTTTGAACTTCTTTATGAG
ATAAATGAACGGGTCAGGACGGGAATTTGGGTTGGCGATTGCTTCATTTACAATAATTCT
TCATGGAGACTTAACTACTGTGTCGGCGGTGAGGTGACCACAATGTTTCATTTAGACCGG
CCTATGTACCTGCTTGGATATCTGGCTAACCAGAGTAGGGTTTTCCTGATTGACAAAGAG
TTCAATGTCATTGGATATACTTTACTGCTCAGCTTGATCGAATACAAGACACTTGTGATG
CGTGATGACTGGGACAGAGCAAATGAGTTGCTGCCATCGATTCCTAAGGAGCACCATAAT
AGTGTTGCTCGTTTCTTGGAGTCGCGAGGTATGGTAGAGGAAGCATTAGAAGTTGCAACA
GAGCCTGACTACAGATTTGAACTAGCCATACAGCTGGGAAAATTAGATATTGCAAAGGAT
ATTGCAGTGGTAGCTCAGAGTGAGTCCAAGTGGAAGCAGTTGGGTGAACTAGCCATGTCT
GCTGGAATGCTGGAGATGGCAGAGGAATGTCTGAAGTTTGCCAATGACTTGAGTGGTCTG
TTGCTACTCTATTCTTCACTAGGAGATGCTGAAGGAATAACTGAACTGGCAAATTTTGCC
AAAGAGCAGGGGAAAAACAATGTCACATTCCTCTGCATGTTCCTTTTGGGTAAAGTGGAG
GAATGCATTCAGCTATTGGTTGATAGCAACCGGATACCTGAGGCTGCTTTTATGGCTAGA
TCTTATCTGCCAAGTAAGGTTTCTGAAATAGTTGCAATTTGGAGGAAGGATCTCAGTAAG
GTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCTAATCTGTTTGAG
AACTGGCAAGTTGCATGTGCTGTTGAAGCTAGAGTTGCAGAGGAAAGGGGTGGCTACCCA
CCAGCAACTGAGTATTTAAATCATGCTGATAGATCAACTAACAACCTTGTAGAGGCTTTC
AACAACATGAGAATGGATGAAGATCCACTTGAAAATGGAGATACGGACCACGAGGTTGCA
CAACAGAGTGGTGATGAGGTACAAGAATTGGAGGCAGATGATGCACAAAATGAGGAACAA
GAAGAGGCTGTGGTCGTGGATGCTGACTCTACTGACGGTGCAGTACTCATTAATGGAAAC
GAGGCAGACGAAGAGTGGGTGCTTACACCACGTCACTAG

Peptide Sequence

PEP ID

XP_016500358.1
PEP Infomation

PREDICTED: coatomer subunit beta'-2-like [Nicotiana tabacum]
Sequence

MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQTQTMVKSFEVTELPV
RSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRSVAVHPTLPYVLSSSDD
MLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMRSSRRVVIGYDEGTIMVKIG
REEPVASMDNSGKIIWAKHNEVQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSRIKIFSKNFQ
EKKSIRPTFSAERIYGGTLLAMCSNDFICFYDWADCRLIRRIDVNVKNLYWADSGDMVAI
ASDTSFYILKYNRDVVSAHLDSGRSVDEQGVEEAFELLYEINERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVIGYTLLLSLIEYKTLVM
RDDWDRANELLPSIPKEHHNSVARFLESRGMVEEALEVATEPDYRFELAIQLGKLDIAKD
IAVVAQSESKWKQLGELAMSAGMLEMAEECLKFANDLSGLLLLYSSLGDAEGITELANFA
KEQGKNNVTFLCMFLLGKVEECIQLLVDSNRIPEAAFMARSYLPSKVSEIVAIWRKDLSK
VNQKAAEALADPEEYPNLFENWQVACAVEARVAEERGGYPPATEYLNHADRSTNNLVEAF
NNMRMDEDPLENGDTDHEVAQQSGDEVQELEADDAQNEEQEEAVVVDADSTDGAVLINGN
EADEEWVLTPRH

Transcript Sequence

Gene sequence data has not been registered.